PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508523.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 328aa    MW: 36958.7 Da    PI: 8.1762
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508523.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.4e-097296126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +kt++C  f   G C+ G++C+FaHg
  XP_004508523.1 72 FKTRICVKFKL-GSCRNGENCNFAHG 96
                    69*********.*************9 PP

2zf-CCCH28.62.4e-09136159225
                     -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                     k++lC+ f+ + +C+yGd+C+F H
  XP_004508523.1 136 KMKLCKKFYNGEECPYGDKCNFLH 159
                     789*******66************ PP

3zf-CCCH36.39.6e-12211236126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC  +  tG+C++Gd C+FaHg
  XP_004508523.1 211 WKTKLCLKWEHTGHCPFGDDCHFAHG 236
                     8************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-1368104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-869102IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-67197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9437198IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-67296IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-4134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.361134162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7134161IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-7136159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-9136160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-15206241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-10209241IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-6210237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601210238IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9211236IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTFPDNIPTF RMSPPHFATN SDVIEVRPQF PMNNQHFDQP PSFKRARISD NNHPPRMMVQ  60
PPSNKGTSHI FFKTRICVKF KLGSCRNGEN CNFAHGVEDI RKPPPNWQEL VGSRNDEQLH  120
ALVAGNWDDD QKIIHKMKLC KKFYNGEECP YGDKCNFLHE DPAKFRDDSR NSRESTTISI  180
GTNGSPKSYG DGTNNLDGNR AVNKQTKGTY WKTKLCLKWE HTGHCPFGDD CHFAHGLEEL  240
QAFGGRVEAE IAGAVANSTK AIIIPTSVSA IDAPPTTLIA SQPVAKEEEQ TKKHLLRLKV  300
NKKINRIYGD WIDDLPLVLH NLPSTVET
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508522.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
RefseqXP_004508523.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT812e-92C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0B2Q0I11e-161A0A0B2Q0I1_GLYSO; Zinc finger CCCH domain-containing protein 39
TrEMBLK7ML631e-161K7ML63_SOYBN; Uncharacterized protein
STRINGGLYMA17G12560.21e-161(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-93C3H family protein